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Full information on isolate BCC0059 (id:331)

Provenance/primary metadata

id: 331
isolate: BCC0059
aliases: CEP0494; R-53243
species: Burkholderia multivorans
genomovar: II
LMG: 29311
country: Canada
continent: North America
source: CF patient
detail of isolation: Sputum
BCC number: BCC0059
year: 1995
recA RFLP: F
ENA accession: ERX1955980 www.ebi.ac.uk
comments: LM-UGent WGS
sender: Adam Baldwin, University of Warwick, UK
curator: Charlotte Peeters, Laboratory of Microbiology, LM-UGent, Ghent University, Belgium (E-mail: Charlotte.Peeters@UGent.be)
update history: 8 updates show details
date entered: 2007-12-13
datestamp: 2019-11-20

Publications (2)

Baldwin A, Mahenthiralingam E, Drevinek P, Pope C, Waine DJ, Henry DA, Speert DP, Carter P, Vandamme P, LiPuma JJ, Dowson CG (2008). Elucidating global epidemiology of Burkholderia multivorans in cases of cystic fibrosis by multilocus sequence typing. J Clin Microbiol 46:290-5
Peeters C, Cooper VS, Hatcher PJ, Verheyde B, Carlier A, Vandamme P (2017). Comparative genomics of Burkholderia multivorans, a ubiquitous pathogen with a highly conserved genomic structure. PLoS One 12:e0176191

Sequence bin

contigs: 44
total length: 6,762,833 bp
max length: 965,703 bp
mean length: 153,701 bp
N50: 384,200
L50: 6
N90: 133,703
L90: 19
N95: 109,597
L95: 22
%GC: 67.09
Ns: 1043
gaps: 3
loci tagged: 60

Show sequence bin

Analysis

rMLST species identification

Rank	Taxon	Taxonomy	Support	Matches
SPECIES	Burkholderia multivorans	Pseudomonadota > Betaproteobacteria > Burkholderiales > Burkholderiaceae > Burkholderia > Burkholderia multivorans	100%

Analysis performed: 2023-03-08

Schemes and loci

MLST

atpD: 166 S

gltB: 186 S

gyrB: 255 S

recA: 185 S

lepA: 201 S

phaC: 152 S

trpB: 4 S

ST: 287

clonal complex: Not defined

Ribosomal MLST

BACT000001 (rpsA): 13947 S

BACT000002 (rpsB): 10306 S

BACT000003 (rpsC): 974 S

BACT000004 (rpsD): 1004 S

BACT000005 (rpsE): 800 S

BACT000006 (rpsF): 7457 S

BACT000007 (rpsG): 8950 S

BACT000008 (rpsH): 776 S

BACT000009 (rpsI): 9139 S

BACT000010 (rpsJ): 850 S

BACT000011 (rpsK): 772 S

BACT000012 (rpsL): 505 S

BACT000013 (rpsM): 998 S

BACT000014 (rpsN): 794 S

BACT000015 (rpsO): 796 S

BACT000016 (rpsP): 6389 S

BACT000017 (rpsQ): 711 S

BACT000018 (rpsR): 918 S

BACT000019 (rpsS): 667 S

BACT000020 (rpsT): 724 S

BACT000021 (rpsU): 622 S

BACT000030 (rplA): 11202 S

BACT000031 (rplB): 11082 S

BACT000032 (rplC): 9762 S

BACT000033 (rplD): 833 S

BACT000034 (rplE): 852 S

BACT000035 (rplF): 1010 S

BACT000036 (rplL): 815 S

BACT000038 (rplI): 1040 S

BACT000039 (rplJ): 7500 S

BACT000040 (rplK): 9019 S

BACT000042 (rplM): 838 S

BACT000043 (rplN): 972 S

BACT000044 (rplO): 8751 S

BACT000045 (rplP): 7976 S

BACT000046 (rplQ): 7829 S

BACT000047 (rplR): 739 S

BACT000048 (rplS): 4695 S

BACT000049 (rplT): 831 S

BACT000050 (rplU): 788 S

BACT000051 (rplV): 790 S

BACT000052 (rplW): 771 S

BACT000053 (rplX): 769 S

BACT000056 (rpmA): 1003 S

BACT000057 (rpmB): 688 S

BACT000058 (rpmC): 665 S

BACT000059 (rpmD): 623 S

BACT000060 (rpmE): 750 S

BACT000061 (rpmF): 743 S

BACT000062 (rpmG): 954 S

BACT000063 (rpmH): 682 S

BACT000064 (rpmI): 691 S

BACT000065 (rpmJ): 398 S

rST: 69946

genus: Burkholderia

species: Burkholderia multivorans

subspecies: Not defined

lineage: Not defined

sublineage: Not defined

other designation: Not defined

notes: Not defined

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