MLST Database Software

BIGSdb

The Bacterial Isolate Genome Sequence Database (BIGSdb) is software designed to store and analyse sequence data for bacterial isolates. Any number of sequences can be linked to isolate records - these can be small contigs assembled from dideoxy sequencing through to whole genomes (complete or multiple contigs generated from parallel sequencing technologies such as 454 or Illumina Solexa). All the functionality of mlstdbnet and agdbnet has been incorporated into BIGSdb and this software will be used to eventually host all the databases on this site. BIGSdb runs on Linux systems using the Apache web server and PostgreSQL database. Further details ...

mlstdbNET

Software used to drive distributed MLST profile and isolate databases.  This software still powers a large proportion of the publicly available MLST databases but has now been superseded by BIGSdb. mlstdbNet runs on Linux systems using the Apache web server and PostgreSQL database.  Further details ...

agdbNet

Software used to drive antigen (nucleotide and/or peptide) sequence databases. AgdbNet runs on Linux systems using the Apache web server and PostgreSQL database. Further details ...