GC Content

This analysis requires both allelic profiles and the allele sequences to be loaded.  Again, individual isolates may be selected or deselected from inclusion using the 'Isolate Selection' dialog reachable from the 'Options' menu.

To run the analysis, click 'Analysis ... Data Summary ... GC Content'. Output is in the form of a table showing the %GC value for each strain at each locus.  Mean values for each strain and for each locus are shown in the right-hand column and bottom row respectively.

Program Output:

Strain abcZ adk aroE fumC gdh pdhC pgm Mean %GC
0109/93 51.73 52.47 54.90 57.63 52.89 55.83 53.56 54.15
0381/93 51.73 52.47 54.90 57.63 52.89 55.83 53.56 54.15
0383/93 51.73 52.47 54.90 57.63 52.89 55.83 53.56 54.15
0395/93 51.73 52.47 54.90 57.63 52.89 55.83 53.56 54.15
0016/93 50.35 52.69 55.51 56.77 51.90 53.54 54.67 53.63
Mean 51.45 52.52 55.02 57.46 52.69 55.38 53.78 54.04