Field breakdown of dataset

Breakdown isolates by: country | region | year | month | animal | breed | age_yr | age_mth | sex | disease | epidemiology | source | species | ribose_fermentation | sorbitol_fermentation | trehalose_fermentation | penicillin | erythromycin | gentamycin | ceftiofur | oxytetracycline | tribrissen | _16S_23S_PCR_type | HV_PCR_type | seM_type | MLEE_designation | sla_present | SpeM_present | TCS1 | TCS2 | sortase_locus | ST | references

Display: allele frequencies | polymorphic sites

General statistics
Number of records	1260
Number of unique STs	288

country (30 values)
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region (212 values)
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year (36 values)
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month (13 values)
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animal (8 values)
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breed (49 values)
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age_yr (20 values)
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age_mth (10 values)
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sex (2 values)
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disease (13 values)
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epidemiology (4 values)
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source (13 values)
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species (2 values)
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ribose_fermentation (2 values)
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sorbitol_fermentation (2 values)
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trehalose_fermentation (2 values)
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penicillin (1 value)
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erythromycin (1 value)
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gentamycin (1 value)
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ceftiofur (1 value)
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oxytetracycline (1 value)
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tribrissen (1 value)
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_16S_23S_PCR_type (10 values)
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HV_PCR_type (11 values)
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seM_type (65 values)
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sla_present (2 values)
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SpeM_present (1 value)
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TCS1 (2 values)
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TCS2 (2 values)
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sortase_locus (2 values)
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ST (288 values)
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Fields containing only one value
MLEE_designation	No value/unassigned

References cited (PubMed id - 0 values)

Allele frequencies

Allele	arcC	nrdE	proS	spi	tdk	tpi	yqiL
1	108	11	118	71	297	94	102
2	76	14	10	109	6	20	17
3	95	174	11	3	32	19	26
4	19	26	30	54	31	30	11
5	40	19	65	31	38	85	27
6	26	33	46	99	14	8	55
7	11	12	67	15	36	59	41
8	58	12	7	1	3	11	1
9	21	1	46	1	8	17	19
10	20	30	20	1	23	57	13
11	8	82	12	1	49	9	13
12	13	15	10	.	3	1	9
13	5	15	2	1	6	10	3
14	2	13	3	14	7	44	1
15	9	5	19	1	12	14	10
16	5	23	32	2	2	22	72
17	1	18	21	2	17	4	1
18	24	13	3	36	2	16	1
19	34	44	.	7	1	15	1
20	1	2	19	4	13	1	7
21	10	16	8	10	1	1	1
22	21	18	9	21	4	6	22
23	2	5	3	3	9	4	1
24	1	1	11	9	3	4	38
25	2	1	1	5	2	3	14
26	2	1	2	10	.	2	17
27	6	.	6	1	.	1	1
28	3	.	2	1	40	.	21
29	2	1	3	2	1	2	10
30	.	2	14	6	5	1	12
31	2	20	5	4	1	1	2
32	1	1	2	1	1	1	1
33	1	.	1	1	1	1	6
34	1	3	1	1	14	4	5
35	52	2	1	1	.	26	14
36	.	1	4	1	.	1	4
37	.	39	1	1	1	1	3
38	1	.	2	1	4	1	1
39	.	1	2	1	4	39	2
40	.	1	1	1	1	14	5
41	.	.	1	1	.	4	3
42	.	1	2	2	.	.	1
43	.	1	3	1	.	.	7
44	.	1	.	39	.	.	2
45	52	48	53	130	43	82	52
46	.	2	.	10	.	.	2
47	.	2	9	3	.	.	1
48	.	1	40	4	.	.	1
49	.	1	1	1	.	.	3
50	.	1	1	3	.	.	1
51	.	1	1	1	.	.	1
52	.	1	.	1	.	.	39
53	.	.	2	1	.	.	3
54	.	.	2	1	.	.	.
55	.	.	.	1	.	.	.
56	.	.	.	2	.	.	1
57	.	.	.	.	.	.	1
58	.	.	.	.	.	.	3
59	.	.	.	.	.	.	1
60	.	.	.	.	.	.	1
61	.	.	.	.	.	.	1
Unique	37	48	51	56	38	42	60