Set database options

Here you can set options for your use of the website. If some of the options don't appear to set when you next go to a query page, try refreshing the page (Shift + Refresh) as it may be cached by your browser.

General options

Changes made in this section will be in effect for all databases hosted on this domain (pubmlst.org).

Interface
Use field combinations
Display records per page
Page bar position:
Java
Switch off if you don't have a Java plugin or to speed up page display.
Enable trace viewing (where available)
Sequence alignments
Sequence alignments are generated when you breakdown a dataset following a search or when using the locus explorer (profiles databases).
Display nucleotides per line

Simple Breakdown
Pie chart style:
Enable 3D effect
Enable transparent palette
Breakdown composite fields (will slow down display of statistics for large datasets)
Advanced Breakdown
Enable 3D effect

Database specific options

Changes in this section will be in effect only for the current database (S. zooepidemicus MLST).

Fields to display in main table

isolate
other_name
country
region
year
month
animal
breed

age_yr
age_mth
sex
disease
epidemiology
source
species
ribose_fermentation

sorbitol_fermentation
trehalose_fermentation
penicillin
erythromycin
gentamycin
ceftiofur
oxytetracycline
tribrissen

_16S_23S_PCR_type
HV_PCR_type
seM_type
MLEE_designation
sla_present
SpeM_present
TCS1
TCS2

sortase_locus
comments
sender
curator
date_entered
datestamp

arcC
nrdE
proS
spi
tdk
tpi
yqiL
ST

Fields to provide drop-down list boxes for when searching

isolate
other_name
country
region
year
month
animal

breed
age_yr
age_mth
sex
disease
epidemiology
source

species
ribose_fermentation
sorbitol_fermentation
trehalose_fermentation
penicillin
erythromycin
gentamycin

ceftiofur
oxytetracycline
tribrissen
_16S_23S_PCR_type
HV_PCR_type
seM_type
MLEE_designation

sla_present
SpeM_present
TCS1
TCS2
sortase_locus
comments
sender

curator
date_entered
datestamp
publications