| id | primary key |
integer |
- |
yes |
5 |
| isolate | isolate name |
text |
- |
yes |
20 |
| aliases | alternative names for isolate | text (multiple) | - | no | - |
| references | PubMed ids that link to publications that describe or include record | integer (multiple) | - | no | - |
| species | |
text |
C. condimenti
C. dublinensis
C. helveticus
C. malonaticus
C. muytjensii
C. pulveris
C. sakazakii
C. turicensis
C. universalis
C. zurichensis
other Cronobacter
other
|
yes |
- |
| biotype | |
text |
1
2
2a
3
4
4a
5
5a
6
7
8a
8b
8c
9
9a
10
11
12
13
13a
13b
13c
14
14a
15
16a
16b
16c
|
no |
- |
| serotype | |
text |
- |
no |
12 |
| SNP_profile | |
text |
- |
no |
20 |
| country | country where strain was isolated |
text |
Afghanistan
Albania
Algeria
Andorra
Angola
Antigua & Barbuda
Argentina
Armenia
Australia
Austria
Azerbaijan
Bahamas
Bahrain
Bangladesh
Barbados
Belarus
Belgium
Belize
Benin
Bhutan
Bolivia
Bosnia & Herzegovina
Botswana
Brazil
Brunei
Bulgaria
Burkina Faso
Burma
Burundi
Cambodia
Cameroon
Canada
Cape Verde
Central African Republic
Chad
Chile
China
Colombia
Comoros
Congo [DRC]
Costa Rica
Croatia
Cuba
Cyprus
Czech Republic
Denmark
Djibouti
Dominica
Dominican Republic
East Timor
Ecuador
Egypt
El Salvador
Equatorial Guinea
Eritrea
Estonia
Ethiopia
Fiji
Finland
France
Gabon
Georgia
Germany
Ghana
Greece
Grenada
Guadeloupe
Guatemala
Guinea
Guinea Bissau
Guyana
Haiti
Honduras
Hungary
Iceland
India
Indonesia
Iran
Iraq
Ireland
Isle of Man
Israel
Italy
Ivory Coast
Jamaica
Japan
Jordan
Kazakhstan
Kenya
Kiribati
Kuwait
Kyrgyzstan
Laos
Latvia
Lebanon
Lesotho
Liberia
Libya
Liechtenstein
Lithuania
Luxembourg
Macedonia
Madagascar
Malawi
Malaysia
Maldives
Mali
Malta
Marshall Islands
Martinique
Mauritania
Mauritius
Mayotte
Mexico
Micronesia
Moldavia
Moldova
Monaco
Mongolia
Montenegro
Morocco
Mozambique
Namibia
Nauru
Nepal
New Caledonia
New Zealand
Nicaragua
Niger
Nigeria
None
North Korea
Norway
Oman
Pakistan
Palau
Palestinian territories
Panama
Papua New Guinea
Paraguay
Peru
Philippines
Poland
Portugal
Qatar
Reunion
Romania
Russia
Rwanda
Samoa
San Marino
São Tomé and Príncipe
Saudi Arabia
Senegal
Serbia
Seychelles
Sierra Leone
Singapore
Slovakia
Slovenia
Solomon Islands
Somalia
South Africa
South Korea
Spain
Sri Lanka
St. Kitts & Nevis
St. Lucia
Sudan
Suriname
Swaziland
Sweden
Switzerland
Syria
Tahiti
Taiwan
Tajikistan
Tanzania
Thailand
The Gambia
The Netherlands
Togo
Tonga
Trinidad & Tobago
Tunisia
Turkey
Turkmenistan
Tuvalu
UK
USA
Uganda
Ukraine
United Arab Emirates
Uruguay
Uzbekistan
Vanuatu
Vatican City
Venezuela
Vietnam
Yemen
Zambia
Zimbabwe
Unknown
|
yes |
- |
| region | |
text |
- |
no |
30 |
| source | |
text |
- |
no |
30 |
| detail_of_isolation | |
text |
- |
no |
30 |
| year | |
integer |
min: 1900; max: 2024
|
expected |
4 |
| month | |
integer |
01
02
03
04
05
06
07
08
09
10
11
12
|
no |
- |
| comments | |
text (multiple) |
- |
no |
256 |
| DOI | DOI accession |
text (multiple) |
- |
no |
50 |
| bioproject_accession | ENA/SRA bioproject accession number |
text (multiple) |
- |
no |
20 |
| biosample_accession | ENA/SRA biosample accession number |
text (multiple) |
- |
expected if submitting a genome assembly |
20 |
| run_accession | ENA/SRA accession number to access short read data. This should start either ERR, SRR, or DRR. |
text |
Must match regular expression: ^(E|D|S)RR[0-9]{6,}$
|
expected if submitting a genome assembly |
15 |
| NCBI_assembly_accession | NCBI assembly accessions should begin with GCA_ or GCF_ |
text (multiple) |
Must match regular expression: ^GC[AF]_\d+
|
no |
20 |
| sender | sender unique name, link to users |
integer |
Click for list of sender ids
|
yes |
4 |
| curator | curator who entered data,link to users |
integer |
Click for list of curator ids
|
yes |
4 |
| date_entered | date first entered |
date |
- |
yes |
10 |
| datestamp | date last modified |
date |
- |
yes |
10 |