MLST
| Locus | Download | Type | Alleles | Length |
Curator(s) |
|---|
| abcZ | ↓ | DNA | 624 | Fixed: 433 bp |
J. Bennett, O. Harrison, K. Jolley |
| adk | ↓ | DNA | 428 | Fixed: 465 bp |
J. Bennett, O. Harrison, K. Jolley |
| aroE | ↓ | DNA | 695 | Fixed: 490 bp |
J. Bennett, O. Harrison, K. Jolley |
| fumC | ↓ | DNA | 644 | Fixed: 465 bp |
J. Bennett, O. Harrison, K. Jolley |
| gdh | ↓ | DNA | 662 | Fixed: 501 bp |
J. Bennett, O. Harrison, K. Jolley |
| pdhC | ↓ | DNA | 660 | Fixed: 480 bp |
J. Bennett, O. Harrison, K. Jolley |
| pgm | ↓ | DNA | 682 | Fixed: 450 bp |
J. Bennett, O. Harrison, K. Jolley |
Finetyping antigens
| Locus | Download | Type | Alleles | Length |
Full name/product |
Curator(s) |
|---|
| PorA VR1 i | ↓ | peptide | 246 | Variable: No limits set |
PorA variable region 1 | K. Jolley |
| PorA VR2 i | ↓ | peptide | 681 | Variable: No limits set |
PorA variable region 2 | K. Jolley |
| FetA VR | ↓ | peptide | 416 | Variable: No limits set |
| I. Feavers |
rplF species
| Locus | Download | Type | Alleles | Length |
Full name/product |
Curator(s) |
|---|
| 'rplF i | ↓ | DNA | 92 | Fixed: 413 bp |
50S ribosomal protein L6 (partial) | J. Bennett |
eMLST (20 locus partial genes)
| Locus | Download | Type | Alleles | Length |
Curator(s) |
|---|
| abcZ | ↓ | DNA | 624 | Fixed: 433 bp |
J. Bennett, O. Harrison, K. Jolley |
| adk | ↓ | DNA | 428 | Fixed: 465 bp |
J. Bennett, O. Harrison, K. Jolley |
| aroE | ↓ | DNA | 695 | Fixed: 490 bp |
J. Bennett, O. Harrison, K. Jolley |
| aspA | ↓ | DNA | 89 | Fixed: 432 bp |
K. Jolley |
| carB | ↓ | DNA | 107 | Fixed: 495 bp |
K. Jolley |
| dhpS | ↓ | DNA | 153 | Variable: (354 min; 363 max) |
K. Jolley |
| fumC | ↓ | DNA | 644 | Fixed: 465 bp |
J. Bennett, O. Harrison, K. Jolley |
| gdh | ↓ | DNA | 662 | Fixed: 501 bp |
J. Bennett, O. Harrison, K. Jolley |
| glnA | ↓ | DNA | 99 | Fixed: 471 bp |
K. Jolley |
| gpm | ↓ | DNA | 103 | Fixed: 534 bp |
K. Jolley |
| mtgA | ↓ | DNA | 96 | Variable: (493 min; 497 max) |
K. Jolley |
| pdhC | ↓ | DNA | 660 | Fixed: 480 bp |
J. Bennett, O. Harrison, K. Jolley |
| pgm | ↓ | DNA | 682 | Fixed: 450 bp |
J. Bennett, O. Harrison, K. Jolley |
| pilA | ↓ | DNA | 133 | Fixed: 432 bp |
K. Jolley |
| pip | ↓ | DNA | 122 | Variable: (412 min; 417 max) |
K. Jolley |
| ppk | ↓ | DNA | 109 | Fixed: 579 bp |
K. Jolley |
| pykA | ↓ | DNA | 103 | Variable: (447 min; 453 max) |
K. Jolley |
| rpiA | ↓ | DNA | 110 | Fixed: 567 bp |
K. Jolley |
| serC | ↓ | DNA | 114 | Variable: (450 min; 452 max) |
K. Jolley |
| talA | ↓ | DNA | 106 | Fixed: 492 bp |
K. Jolley |
Antigen genes
| Locus | Download | Type | Alleles | Length |
Full name/product |
Aliases |
Curator(s) |
|---|
| 'porA i | ↓ | DNA | 162 | Variable: (1029 min; 1152 max) |
porin, class 1 outer membrane protein (partial) | |
K. Jolley |
| 'porB i | ↓ | DNA | 682 | Variable: (850 min; 1026 max) |
porin, PorB (partial) | |
H. Claus |
| NEIS1364 (porA) i | ↓ | DNA | 281 | Variable: (1146 min; 1200 max) |
PorA, porin, class 1 outer membrane protein | NMC1364 |
K. Jolley |
| NEIS1963 (fetA) i | ↓ | DNA | 435 | Variable: No limits set |
enterobactin receptor FetA | frpB |
C. Brehony |
| NEIS1969 (nadA) i | ↓ | DNA | 71 | Variable: (750 min; 2100 max) |
adhesin/invasin | NMC1969 |
S. Bambini |
| NEIS2020 (porB) i | ↓ | DNA | 392 | Variable: No limits set |
PorB, porin, major outer membrane protein | NMC2020 |
H. Claus |
| NEIS2109 (nhba) i | ↓ | DNA | 231 | Variable: (1255 min; 1500 max) |
putative periplasmic protein | NMC2109 |
A. Muzzi |
eMLST (20 locus whole genes)
| Locus | Download | Type | Alleles | Length |
Full name/product |
Aliases |
Curator(s) |
|---|
| NEIS0021 (pilA) i | ↓ | DNA | 209 | Variable: No limits set |
probable signal recognition particle protein | NMC0021 |
|
| NEIS0074 (pykA) i | ↓ | DNA | 182 | Variable: No limits set |
pyruvate kinase (EC 2.7.1.40) | NLA0420; NMA0177; NMB0089; NMC0074 |
|
| NEIS0323 (ppk) i | ↓ | DNA | 192 | Variable: No limits set |
polyphosphate kinase | NMC0323 |
|
| NEIS0363 (carB) i | ↓ | DNA | 238 | Variable: No limits set |
carbamoyl phosphate synthase large subunit (EC 6.3.5.5) | NMC0363 |
|
| NEIS0743 (pgm) i | ↓ | DNA | 184 | Variable: No limits set |
Phosphoglucomutase (EC 5.4.2.2) | NLA14390; NMA1001; NMB0790; NMC0743 |
C. Kahler |
| NEIS0767 (adk) i | ↓ | DNA | 108 | Variable: No limits set |
adenylate kinase | NMC0767 |
|
| NEIS0905 (pip) i | ↓ | DNA | 182 | Variable: No limits set |
proline iminopeptidase | NMC0905 |
|
| NEIS1015 (abcZ) i | ↓ | DNA | 163 | Variable: No limits set |
ABC transporter ATP-binding protein | NMC1015 |
|
| NEIS1185 (aspA) i | ↓ | DNA | 171 | Variable: No limits set |
aspartate ammonia-lyase | NMC1185 |
|
| NEIS1278 (pdhC) i | ↓ | DNA | 171 | Variable: (2664 min; 2679 max) |
pyruvate dehydrogenase (EC 1.2.4.1) | NLA11750; NMA1554; NMB1341; NMC1278 |
|
| NEIS1331 (gdh) i | ↓ | DNA | 177 | Variable: No limits set |
glucose-6-phosphate 1-dehydrogenase | NMC1331 |
|
| NEIS1396 (fumC) i | ↓ | DNA | 206 | Variable: No limits set |
fumarate hydratase class II (EC 4.2.1.2) | NLA8680; NMA1670; NMB1458; NMC1396 |
|
| NEIS1440 (rpiA) i | ↓ | DNA | 145 | Variable: No limits set |
ribose-5-phosphate isomerase A | NMC1440 |
|
| NEIS1524 (gpm) i | ↓ | DNA | 151 | Variable: No limits set |
phosphoglycerate mutase (EC 5.4.2.1) | NLA6840; NMA1801; NMB1604; NMC1524 |
|
| NEIS1554 (serC) i | ↓ | DNA | 184 | Variable: No limits set |
phosphoserine aminotransferase | NMC1554 |
|
| NEIS1609 (folP) i | ↓ | DNA | 205 | Variable: No limits set |
dihydropteroate synthase | NMC1609 |
|
| NEIS1809 (glnA) i | ↓ | DNA | 165 | Variable: No limits set |
glutamine synthetase | NMC1809 |
|
| NEIS1810 (aroE) i | ↓ | DNA | 126 | Variable: No limits set |
shikimate dehydrogenase | NMC1810 |
|
| NEIS1811 (mtgA) i | ↓ | DNA | 130 | Variable: No limits set |
monofunctional biosynthetic peptidoglycan transglycosylase | NMC1811 |
|
| NEIS1818 (talA) i | ↓ | DNA | 158 | Variable: No limits set |
transaldolase | NMC1818 |
|
Download in tab-delimited text format
