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PubMLST
Public databases for molecular typing
and microbial genome diversity
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Neisseria
spp.
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Neisseria
isolates
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Neisseria
isolates database
Record versions:
current
; Record creation:
all time
Isolate count
104,743
551 [month]
Browse isolates
Genome count
60,753
193 [month]
Browse genomes
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Field:
isolate count
genome count
sequence bin size
country
continent
region
town or city
year
non culture
epidemiological year
age yr
age range
age mth
sex
disease
source
epidemiology
species
serogroup
genogroup
genogroup notes
capsule group
serotype
sero subtype
type strain
comments
amoxicillin mic sign
amoxicillin mic
azithromycin mic sign
azithromycin mic
cefixime mic sign
cefixime mic
cefixime SIR
cefotaxime mic sign
cefotaxime mic
cefotaxime SIR
ceftriaxone mic sign
ceftriaxone mic
ceftriaxone SIR
chloramphenicol mic sign
chloramphenicol mic
chloramphenicol SIR
ciprofloxacin mic sign
ciprofloxacin mic
ciprofloxacin SIR
penicillin mic sign
penicillin mic
penicillin SIR
rifampicin mic sign
rifampicin mic
rifampicin SIR
spectinomycin mic sign
spectinomycin mic
spectinomycin SIR
sulphonamide mic sign
sulphonamide mic
tetracycline mic sign
tetracycline mic
tetracycline SIR
date sampled
isoyear sampled
week sampled
date received
bioproject accession
biosample accession
NCBI assembly accession
run accession
sender
curator
date entered
datestamp
PorB profile
Bexsero reactivity
Bexsero notes
Trumenba reactivity
Trumenba notes
UK school year
persons in household
antibiotic use
current URTI
cigarettes per day
ecigarettes per week
waterpipes per month
passive smoking
pubs clubs per week
persons kissed past week
regular partner
regular partner smokes
ethnicity
Circumcision status
HIV status
multiple partners
new partner
ST (MLST)
clonal complex (MLST)
pST (beta lactamase plasmid)
MenDeVAR Bexsero reactivity (Bexsero Antigen Sequence Typing (BAST))
MenDeVAR Trumenba reactivity (Bexsero Antigen Sequence Typing (BAST))
BAST (Bexsero Antigen Sequence Typing (BAST))
pST (Conjugative Plasmid)
pST (Cryptic Plasmid)
OMV (GC OMV peptide typing)
cluster (GC OMV peptide typing)
ST (NG MAST v2.0)
cgST (N. gonorrhoeae cgMLST v1)
cgST (N. gonorrhoeae cgMLST v2)
pbla type (Ng pblaST)
ST (NG STAR)
CC (NG STAR)
cgST (N. meningitidis cgMLST v3)
cluster (OMV peptide typing)
OMV (OMV peptide typing)
rST (Ribosomal MLST)
genus (Ribosomal MLST)
species (Ribosomal MLST)
subspecies (Ribosomal MLST)
lineage (Ribosomal MLST)
sublineage (Ribosomal MLST)
other designation (Ribosomal MLST)
notes (Ribosomal MLST)
genospecies (rplF species)
rplF id (rplF species)
provenance
MLST annotation status
Finetyping antigens annotation status
Bexsero Antigen Sequence Typing (BAST) annotation status
NG MAST v2.0 annotation status
N. gonorrhoeae cgMLST v1 annotation status
N. gonorrhoeae cgMLST v2 annotation status
NG STAR annotation status
N. meningitidis cgMLST v2 annotation status
N. meningitidis cgMLST v3 annotation status
Ribosomal MLST annotation status
rplF species annotation status
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