MLST of Listeria monocytogenes

The first description of this scheme can be found in Salcedo et al. (2003). Development of a multilocus sequence typing method for analysis of Listeria monocytogenes clones. J Clin Microbiol 41:757-62.

Genes

The Listeria monocytogenes MLST scheme uses fragments of the following seven house-keeping genes:

ABC transporter (abcZ)
Beta-glucosidase (bglA)
Catalase (cat)
Succinyl diaminopimelate dessucinylase (dapE)
D-amino acid aminotransferase (dat)
L-lactate dehydrogenase (ldh)
Histidine kinase (lhkA)

PCR

Bacterial cell lysates were obtained by sonication (10 min) followed by centrifugation for 5 min. The PCR conditions were initial denaturation at 94°C for 4 min followed by 25 cycles of denaturation at 94°C for 30 s, annealing at 52°C for 30 s (except for bglA, which had an annealing temperature of 45°C), and extension at 72°C for 2 min followed by a final extension step of 72°C for 10 min.

Primers used for PCR amplification and sequencing

GenePrimer and sequence (5'-3')
ForwardReverse
abcZabcZ-Up: TCGCTGCTGCCACTTTTATCCAabcZ-Dn: TCAAGGTCGCCGTTTAGAG
bglAbglA-Up: GCCGACTTTTTATGGGGTGGAGbglA-Dn: CGATTAAATACGGTGCGGACATA
catcat-Up: ATTGGCGCATTTTGATAGAGAcat-Dn: AGATTGACGATTCCTGCTTTTG
dapEdapE-Up: CGACTAATGGGCATGAAGAACAAGdapE-Dn: ATCGAACTATGGGCATTTTTACC
datdat-Up: GAAAGAGAAGATGCCACAGTTGAdat-Dn: TGCGTCCATAATACACCATCTTT
ldhldh-Up: ATTTTGATCGTATTGGGGTTTTldh-Dn: TACTGAATGGATTAGCGAAGATGA
lhkAlhkA-Up: AGAATGCCAACGACGAAACClhkA-Dn: TGGGAAACATCAGCAATAAAC

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Citing the database

The preferred format for citing this website in publications is:

This publication made use of the Listeria MLST website (http://pubmlst.org/ listeria/) developed by Keith Jolley and sited at the University of Oxford (Jolley et al. 2004, BMC Bioinformatics, 5:86). The development of this site has been funded by the Wellcome Trust.

Status

Profile database

Profiles: 34
Last updated: 2006-08-11

Isolate database

Isolates: 84
Last updated: 2006-08-11