MLST of Listeria monocytogenes
The first description of this scheme can be found in Salcedo et al. (2003). Development of a multilocus sequence typing method for analysis of Listeria monocytogenes clones. J Clin Microbiol 41:757-62.
Genes
The Listeria monocytogenes MLST scheme uses fragments of the following seven house-keeping genes:
ABC transporter (abcZ)
Beta-glucosidase (bglA)
Catalase (cat)
Succinyl diaminopimelate dessucinylase (dapE)
D-amino acid aminotransferase (dat)
L-lactate dehydrogenase (ldh)
Histidine kinase (lhkA)
PCR
Bacterial cell lysates were obtained by sonication (10 min) followed by centrifugation for 5 min. The PCR conditions were initial denaturation at 94°C for 4 min followed by 25 cycles of denaturation at 94°C for 30 s, annealing at 52°C for 30 s (except for bglA, which had an annealing temperature of 45°C), and extension at 72°C for 2 min followed by a final extension step of 72°C for 10 min.
Primers used for PCR amplification and sequencing
| Gene | Primer and sequence (5'-3') | ||
|---|---|---|---|
| Forward | Reverse | ||
| abcZ | abcZ-Up: TCGCTGCTGCCACTTTTATCCA | abcZ-Dn: TCAAGGTCGCCGTTTAGAG | |
| bglA | bglA-Up: GCCGACTTTTTATGGGGTGGAG | bglA-Dn: CGATTAAATACGGTGCGGACATA | |
| cat | cat-Up: ATTGGCGCATTTTGATAGAGA | cat-Dn: AGATTGACGATTCCTGCTTTTG | |
| dapE | dapE-Up: CGACTAATGGGCATGAAGAACAAG | dapE-Dn: ATCGAACTATGGGCATTTTTACC | |
| dat | dat-Up: GAAAGAGAAGATGCCACAGTTGA | dat-Dn: TGCGTCCATAATACACCATCTTT | |
| ldh | ldh-Up: ATTTTGATCGTATTGGGGTTTT | ldh-Dn: TACTGAATGGATTAGCGAAGATGA | |
| lhkA | lhkA-Up: AGAATGCCAACGACGAAACC | lhkA-Dn: TGGGAAACATCAGCAATAAAC | |