Submission of data
All users are welcome to submit their strain information and new allele sequences to our databases for Campylobacter species. This information will be made available on this web site. In order that queries and requests for strains can be addressed to the submitter of isolate data, the name and affiliation of the submitter will be displayed on the website. E-mail addresses are not displayed but can be requested from the curator. Please contact the curator or database manager if you do not wish your details to be displayed.
In order to maintain the quality of the data, the databases are curated and all submissions will be checked before entry.
C. jejuni/coli database - Automated submission system
We have introduced an automated submission system. This system will guide you through uploading allele trace files, isolate data and new allelic profiles. Please note that new allele assignment requires submission of both forward and reverse trace files. New profile/ST assignment requires submission of data for an isolate with that profile.
- Submission system overview
- Reasons for introducing the system
- Detailed step-by-step instructions
- Access automated submission system
Non jejuni/coli database
Please send data to William Miller using the template below. New allele assignment requires submission of corresponding forward and reverse trace files.
Template files
The template files listed below will help you upload your data in the correct format.
| Database | Template | Version | Field description |
|---|---|---|---|
| PubMLST C. jejuni/coli isolate database | Download | 2010-05-10 | Fields |
| PubMLST Non-C. jejuni/coli isolate database | Download | 2011-11-16 | Fields |
(in some browsers you may have to right-click and select 'Save Target As' or 'Save Link As').
Fla and porA sequences
Please send forward and reverse trace files for these directly to the curators as E-mail attachments.
- Curators: Alison Cody and Frances Colles