Returns allele sequence based on locus name and allele
number
Finds a database match to an allele sequence. The
sequence must be trimmed to the start and end of the
locus with no extraneous bases. If an exact match is not
found, the id of the nearest sequence will be returned
along with a list of nucleotide differences.
Returns list of available databases
Returns list of loci defined for database
Returns URL of FASTA file of sequences for particular
locus
Returns URL of a tab-delimited list of allelic profile
definitions
Returns URL of FASTA file of sequences for particular
locus
Returns allelic profile defined for a ST
Returns list of STs that contain allthe alleles
specified. Any number of loci can be included in a query
- include all loci for an exact match.
Performs a BLAST query against all loci for a particular
database
Returns list of STs that match at at least the specified
number of loci. Query is by allelic profile
Returns list of STs that match at at least the specified
number of loci. Query is by ST number
Returns list of ST definitions (ST + profile) that match
at at least the specified number of loci. Query is by ST
Returns list of ST definitions (ST + profile) that match
at at least the specified number of loci. Query is by
profile.
Returns the number of alleles defined for specified
locus.
Returns number of defined profile
Returns standard length of locus and a boolean value
indicating whether variable lengths are allowed
Returns number of isolates submitted to database
Returns isolate fields defined for database
Returns isolate record
Returns list of clonal complexes defined in database
Returns the clonal complex for a ST if it is defined
Returns a list of isolate ids that match all fields.
Searching is not case-sensitive. Any number of fields
can be passed as arguments. By passing an exactMatch
boolean parameter, you can set whether exact or partial
matches are used.
Returns list of isolate ids that have profiles that
match the specified ST at at least the specified number
of loci
Returns list of isolate ids that have profiles that
match the specified profile at at least the specified number
of loci