getClonalComplexes

Description: Returns list of clonal complexes defined for database.

Arguments

• database (string)

Sample Perl code

#!/usr/bin/perl
#Written by Keith Jolley

use SOAP::Lite;
use strict;
use warnings;

#####Sample arguments#########
my $database = 'neisseria';
##############################

my $soap = SOAP::Lite
    -> uri('http://pubmlst.org/MLST')
    -> proxy('http://pubmlst.org/cgi-bin/mlstdbnet/mlstFetch.pl');
my $soapResponse = $soap->getClonalComplexes($database);
unless ($soapResponse->fault){
    my @complexes;
    for my $complex ($soapResponse->valueof('//complex')) {
	push @complexes, $complex
    }
    print "$_\n" foreach (@complexes)
} else {
    print join ', ',$soapResponse->faultcode,$soapResponse->faultstring;
}

Sample Java code

package org.pubmlst.mlstSOAP;

import org.apache.axis.client.Call;
import org.apache.axis.client.Service;
import javax.xml.namespace.QName;
import java.util.ArrayList;

public class GetClonalComplexes {

    public static void main(String[] args) {
	//Sample arguments//////////////////////////////////////////////
	String database = "neisseria";
	////////////////////////////////////////////////////////////////
	try {
	    String endpoint = "http://pubmlst.org/cgi-bin/mlstdbnet/mlstFetch.pl";
	    Service service = new Service();
	    Call call = (Call) service.createCall();
	    call.setTargetEndpointAddress(new java.net.URL(endpoint));
	    call.setOperationName(new QName("http://pubmlst.org/MLST/",
					    "getClonalComplexes"));
	    ArrayList ret = (ArrayList) call.invoke(new Object[] { database });
	    for (int i = 0; i < ret.size(); i++) {
		String complex = (String)ret.get(i);
		System.out.println(complex);
	    }
	} catch (Exception e) {
	    System.err.println(e.toString());
	}
    }
}

Output

ST-103 complex
ST-106 complex
ST-1157 complex
ST-116 complex
ST-11 complex/ET-37 complex
ST-1494 complex (lactamica)
ST-1540 complex (lactamica)
ST-162 complex
ST-167 complex
ST-174 complex
ST-18 complex
ST-198 complex
ST-1 complex/subgroup I/II